3D Model and Similar Sequences of Antimicrobial Peptides from Human Microbiome.

3D Models are generated using molecular dynamics simulation and energy minimization approach.

	3D will appear here.
CLICK IMAGE TO VIEW 3D MODEL HMAMP

BLAST HMMER InterPro

Similar sequences	Similarity Score
MSPLMLFFGAKIQRFFEITRKKVKKVLEIR	0.970

The hyperlinks BLASTp, HMMER or InterPro, will redirect you to their respective webpage and autofill the queried sequence in the query box of the respective tool. The non-redundant protein database and blastp algorithm will be auto-selected in the BLAST service. The PDB database will be autoselected in the HMMER service.

BLASTp - Fast local similarity search tool for protein sequence databases.

HMMER - Fast sensitive protein homology searches using profile hidden Markov models (HMMs) for querying against both sequence and HMM target databases.

InterPro - InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.

Using directory D:/xampp/htdocs/amp/jmol
  adding support.js
  ...jmolApplet0
      ...adding 0008.png
      ...copying
D:/xampp/htdocs/amp/PDB/0008.pdb
         to
D:/xampp/htdocs/amp/jmol/0008.pdb
      ...adding 0008.spt