3D Model and Similar Sequences of Antimicrobial Peptides from Human Microbiome.

3D Models are generated using molecular dynamics simulation and energy minimization approach.
3D will appear here.
CLICK IMAGE TO VIEW 3D MODEL
HMAMP
BLAST     HMMER     InterPro

Similar sequences Similarity Score
MSGKNQQNQNQQKQNKQNQNQNQNQNQQEQQNQNRR 0.910
MSGKNQQNQNQQNQNQQKQNKQNQNQNQNQNQNQQEQQNQNRR 0.880
MSGKNQQNQNQQNQNQQKQNKQNQNQNQNQNQQEQQNQNRR 0.860
MSGKNQQNQNQQNQNQQKQNNQNQNQNQNQNQQEQQNQNRR 0.860
MSGKNQQNQNQQNQNQQKQNQNQNQNQQEQQNQNRR 0.860
MSGKNQQNQNQQNQNQQNQNQQKQNKQNQNQNQNQQEQQNQNRR 0.780
MSGKNQQNQNQQNQNQQKQNQQKQNKQNQNQDQNQQEQQNQNRR 0.760
MSGKNQQNQNQQNQNQQNQNQQNQNQQKQNKQNQNQNQNQQEQQNQNRR 0.740
MSKNKQQNQNKQQNQFQNQNQNQNQNKQQNQQNQNRSQHNEQF 0.720
MNNQNNQNQQQNKNNQNQQNQQNQQQNKNQQNNQR 0.590
MQESKNNKQQNQQNQQNQQQKQQNQQNQNKEQNR 0.550
MENRNQNQKQNQKQNQQNQQQSQQQNQNENRR 0.510


The hyperlinks BLASTp, HMMER or InterPro, will redirect you to their respective webpage and autofill the queried sequence in the query box of the respective tool. The non-redundant protein database and blastp algorithm will be auto-selected in the BLAST service. The PDB database will be autoselected in the HMMER service.

BLASTp - Fast local similarity search tool for protein sequence databases.

HMMER - Fast sensitive protein homology searches using profile hidden Markov models (HMMs) for querying against both sequence and HMM target databases.

InterPro - InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
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Based on a template by A. Herráez and J. Gutow