3D Model and Similar Sequences of Antimicrobial Peptides from Human Microbiome.

3D Models are generated using molecular dynamics simulation and energy minimization approach.
3D will appear here.
CLICK IMAGE TO VIEW 3D MODEL
HMAMP
BLAST     HMMER     InterPro

Similar sequences Similarity Score
MLGGVVGGVVGGVVGGVVGGVVGGVVGGVVGGVVGGVLGGVVGGVVGGV 0.960
MLGGVVGGVVGGVVGGVVGGVVGGVVGGVLGGVVGGVVGGV 0.950
MLGGVVGGVVGGVVGGVVGGVVGGVLGGVVGGVVGGV 0.900
MGGCVVGGCVVGGSVVGGSVVGGSVVGGSVVGGSVVGGSVVGGCVVGG 0.840
MLGGVVGGVVGGVVGGVLGGVVGGVVGGV 0.780
MVGVSGFSGVLGGVVGGVVGGVLGGVVGGVVGGV 0.730
MGVGAGVVVVGVGAGVVVVGVGAGVVVVGVGAGVVVLGVGSGVVVVGVG 0.550
MVVVGSGVVVVVVVGSSVVVVVVVGSSVVVVVVVVVVVVVVVT 0.550
MLGSGVGVVLGSGVGSGVGSVLGSGVGSGVGVALGSGVGSGVGSGFGAV 0.510
MVVVGSSVVVVVVVVGSSVVVVVVVVGSSVVVVVVVVVVVVVVVT 0.510
MGGSSMGGGSMGGMGGSSMGGGGYGGSSMGGGSMGGGYGGGMY 0.500
MVVVGVGAGVVVVGVGAGVVVVGVGAGVVVLGVGSGVVVVGVG 0.500


The hyperlinks BLASTp, HMMER or InterPro, will redirect you to their respective webpage and autofill the queried sequence in the query box of the respective tool. The non-redundant protein database and blastp algorithm will be auto-selected in the BLAST service. The PDB database will be autoselected in the HMMER service.

BLASTp - Fast local similarity search tool for protein sequence databases.

HMMER - Fast sensitive protein homology searches using profile hidden Markov models (HMMs) for querying against both sequence and HMM target databases.

InterPro - InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
Page skeleton and JavaScript generated by the Export to Web module of Jmol 14.29.55 2019-10-09 17:42 on Dec 2, 2019.
Based on a template by A. Herráez and J. Gutow