3D Model and Similar Sequences of Antimicrobial Peptides from Human Microbiome.

3D Models are generated using molecular dynamics simulation and energy minimization approach.
3D will appear here.
CLICK IMAGE TO VIEW 3D MODEL
HMAMP
BLAST     HMMER     InterPro

Similar sequences Similarity Score
MSGKNQQNQNQQNQNQQKQNKQNQNQNQNQNQNQQEQQNQNRR 0.980
MSGKNQQNQNQQNQNQQKQNNQNQNQNQNQNQQEQQNQNRR 0.980
MSGKNQQNQNQQKQNKQNQNQNQNQNQQEQQNQNRR 0.940
MSGKNQQNQNQQNQNQQKQNQNQNQNQQEQQNQNRR 0.940
MSGKNQQNQNQQNQNQQNQNQQKQNKQNQNQNQNQQEQQNQNRR 0.920
MSGKNQQNQNQQNQNQQKQNQQKQNKQNQNQDQNQQEQQNQNRR 0.890
MSGKNQQNQNQQNQNQQNQNQQNQNQQKQNKQNQNQNQNQQEQQNQNRR 0.870
MSGKNQQNQNQQKQNKQNQNQNQNQNQNQNQQEQQNQQNQNRR 0.860
MSKNKQQNQNKQQNQFQNQNQNQNQNKQQNQQNQNRSQHNEQF 0.740
MENRNQNQKQNQKQNQQNQQQSQQQNQNENRR 0.580
MNNQNNQNQQQNKNNQNQQNQQNQQQNKNQQNNQR 0.530
MQESKNNKQQNQQNQQNQQQKQQNQQNQNKEQNR 0.510


The hyperlinks BLASTp, HMMER or InterPro, will redirect you to their respective webpage and autofill the queried sequence in the query box of the respective tool. The non-redundant protein database and blastp algorithm will be auto-selected in the BLAST service. The PDB database will be autoselected in the HMMER service.

BLASTp - Fast local similarity search tool for protein sequence databases.

HMMER - Fast sensitive protein homology searches using profile hidden Markov models (HMMs) for querying against both sequence and HMM target databases.

InterPro - InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
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Based on a template by A. Herráez and J. Gutow